ORscraper - Extract Information from Clinical Reports from 'Oncomine
Reporter' and NCBI 'ClinVar'
Clinical reports generated by 'Oncomine Reporter' software
contain critical data in unstructured PDF format, making manual
extraction time-consuming and error-prone. 'ORscraper' provides
a coherent suite of functions to automate this process,
allowing researchers to parse reports, identify key biomarkers,
extract genetic variant tables, and filter results. It also
integrates with the NCBI 'ClinVar' API
<https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted
data.