Package: ORscraper
Type: Package
Title: Extract Information from Clinical Reports from 'Oncomine
        Reporter' and NCBI 'ClinVar'
Version: 0.1.1
Authors@R: c(
    person("Samuel", "González", email = "samugonz0204@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0007-9531-9821")),
    person("Antonio Jesus", "Canepa", role = "ctb", comment = c(ORCID = "0000-0002-0608-2743")),
    person("Patricia", "Saiz", role = "ctb", comment = c(ORCID = "0000-0001-7106-5192")),
    person("María", "González", role = "ctb", comment = c(ORCID = "0009-0000-1887-4644"))
  )
Description: Clinical reports generated by 'Oncomine Reporter' software
        contain critical data in unstructured PDF format, making manual
        extraction time-consuming and error-prone. 'ORscraper' provides
        a coherent suite of functions to automate this process,
        allowing researchers to parse reports, identify key biomarkers,
        extract genetic variant tables, and filter results. It also
        integrates with the NCBI 'ClinVar' API
        <https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted
        data.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.0.0)
SystemRequirements: poppler-cpp (>= 0.73)
Imports: pdftools, stringr, readxl, rentrez
Suggests: testthat (>= 3.0.0), rmarkdown, knitr, mockery, spelling
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/SamuelGonzalez0204/ORscraper
BugReports: https://github.com/SamuelGonzalez0204/ORscraper/issues
Language: en-US
Config/pak/sysreqs: libicu-dev libjpeg-dev libxml2-dev libssl-dev
        libpoppler-cpp-dev poppler-data
Repository: https://samuelgonzalez0204.r-universe.dev
Date/Publication: 2026-03-10 20:37:03 UTC
RemoteUrl: https://github.com/samuelgonzalez0204/orscraper
RemoteRef: HEAD
RemoteSha: 30ef489dbaa16a2884dd1231c8a43beb41bb8595
NeedsCompilation: no
Packaged: 2026-11-05 10:36:01 UTC; root
Author: Samuel González [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-9531-9821>),
  Antonio Jesus Canepa [ctb] (ORCID:
    <https://orcid.org/0000-0002-0608-2743>),
  Patricia Saiz [ctb] (ORCID: <https://orcid.org/0000-0001-7106-5192>),
  María González [ctb] (ORCID: <https://orcid.org/0009-0000-1887-4644>)
Maintainer: Samuel González <samugonz0204@gmail.com>